PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015105

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 398aa MW: 45299 Da PI: 5.7289

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-15506	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.5e-31	214	268	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v+ LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Lsa015105 214 KTRIRWTQDLHDRFVECVSCLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 268 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.508	211	271	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-16	212	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-27	213	269	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-23	214	269	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	218	267	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-16	298	344	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MNTLKVGYNH ETVYNLKARE FGGAAAVQQQ PWQVGITILP SEIEARDANL QEDQQQQIIN 60 YRQEVPSCSK TIMEQIGSPA SAVFATEKYL GFSQNGVRRS VHVNDETDVS SVPQQMRFDN 120 HFMHPHDNGI FSSYQRSSSF KMRSSNNQSE RDQIRELKRK LLDESDTSDW RQPQPSICFD 180 GNQDLGQGQF GRIRPASGQH SVNCTNPGNV MPSKTRIRWT QDLHDRFVEC VSCLGGAEKA 240 TPKAILKLMD SEGLTIFHVK SHLQKYRIAK YLPESGKGNS EKRTTMDTIS QIENISGMQF 300 KDALQMQLAV QRQLHEQLEI QRNLQLRIEE QAKQLKKMFN QHQQQKANKS QNSDITSSHD 360 DHHSTNLNDD DDDDDDDDDD ALNLDDDSAD TLFPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MNTLKVGYNH ETVYNLKARE FGGAAAVQQQ PWQVGITILP SEIEARDANL QEDQQQQIIN  60
YRQEVPSCSK TIMEQIGSPA SAVFATEKYL GFSQNGVRRS VHVNDETDVS SVPQQMRFDN  120
HFMHPHDNGI FSSYQRSSSF KMRSSNNQSE RDQIRELKRK LLDESDTSDW RQPQPSICFD  180
GNQDLGQGQF GRIRPASGQH SVNCTNPGNV MPSKTRIRWT QDLHDRFVEC VSCLGGAEKA  240
TPKAILKLMD SEGLTIFHVK SHLQKYRIAK YLPESGKGNS EKRTTMDTIS QIENISGMQF  300
KDALQMQLAV QRQLHEQLEI QRNLQLRIEE QAKQLKKMFN QHQQQKANKS QNSDITSSHD  360
DHHSTNLNDD DDDDDDDDDD ALNLDDDSAD TLFPSKIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A103Y6P3	1e-164	A0A103Y6P3_CYNCS; Homeodomain-like protein
STRING	VIT_08s0007g06310.t01	2e-77	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-63	G2-like family protein